Genomics Boot Camp Courses

GWAS Tutorial with SLEMM: A Beginner's Guide

2 ratings

Comprehensive guide to GWAS using SLEMM software, covering data preparation and analysis. Learn essential functions and step-by-step instructions for conducting genome-wide association studies effectively.

• YouTube
• 31 minutes
• Self-Paced
• Free Video

The 15 Most Important R Commands - R for Beginners

Learn 15 frequently used R commands for scripting, data wrangling, visualization, and file handling with dplyr and tidyverse.

• YouTube
• 1 hour 11 minutes
• Self-Paced
• Free Video

Genomic Selection - Introduction to Genomics Theory

Introduces genomic selection for estimating breeding values from genome-wide SNP markers and accelerating genetic gain in animal breeding.

• YouTube
• 37 minutes
• Self-Paced
• Free Video

Genomic Inbreeding - Introduction to Genomics Theory

Explore genomic inbreeding through identity by descent, identity by state, and runs of homozygosity, including coefficient calculation and detection of selection signatures and recessive disorders.

• YouTube
• 33 minutes
• Self-Paced
• Free Video

Selection Signatures - Introduction to Genomics Theory - Genomics 101

Learn how natural and artificial selection leave detectable signatures in SNP patterns, using genetic hitchhiking and population comparisons to locate selected genomic regions.

• YouTube
• 23 minutes
• Self-Paced
• Free Video

Genomic Admixture - Introduction to Genomics Theory

Explore how SNP data reveal genomic admixture through admixture graphs, ancestry-informative SNPs, and reference-set analysis.

• YouTube
• 28 minutes
• Self-Paced
• Free Video

Genome-Wide Association Studies - Introduction to Genomics Theory

Learn how genome-wide association studies connect SNP genotypes to traits, interpret Manhattan plots, and address false signals through multiple-testing and population-structure corrections.

• YouTube
• 37 minutes
• Self-Paced
• Free Video

Linkage Disequilibrium - Introduction to Genomics Theory

An introduction to linkage disequilibrium, covering LD blocks, genetic distance, and the D, D′, and r² measures used with SNP data.

• YouTube
• 33 minutes
• Self-Paced
• Free Video

SNP Chips - Introduction to Genomics Theory - Genomics 101

An introduction to SNP chip technology, including how chips work, why they are useful, data-handling notes, allele and genotype codes, and chip types.

• YouTube
• 28 minutes
• Self-Paced
• Free Video

DNA and Genetic Markers - Introduction to Genomics Theory

An introduction to genomics explaining DNA, the genomic revolution, and molecular markers, with particular focus on single nucleotide polymorphism data.

• YouTube
• 36 minutes
• Self-Paced
• Free Video

Structure Tutorial

Tutorial on preparing SNP data and using Structure to analyze and visualize population admixture in goat genotypes.

• YouTube
• 25 minutes
• Self-Paced
• Free Video

VarLD- Linkage Disequilibrium Based Selection Signatures - A Comprehensive Tutorial

Tutorial on using varLD to detect selection signatures from linkage disequilibrium, covering genotype preparation with PLINK, analysis, and visualization in R.

• YouTube
• 28 minutes
• Self-Paced
• Free Video

STRUCTURE Harvester: Determining Optimal Subpopulations Using Python Scripts

Master the STRUCTURE Harvester analysis method using Python scripts to determine optimal subpopulation numbers in genomic data, with practical demonstrations and result interpretation guidance.

• YouTube
• 27 minutes
• Self-Paced
• Free Video

DNA Paternity Testing Using SNP Data and PLINK Software

Learn how to perform DNA paternity testing using SNP markers and PLINK software, from data preparation through results interpretation - with clear step-by-step guidance for beginners.

• YouTube
• 11 minutes
• Self-Paced
• Free Video

Top 5 Common PLINK Errors and Solutions in Genomics Analysis

Master common PLINK error troubleshooting, from file opening issues to chromosome coding problems, with practical solutions for genomic data analysis and R integration.

• YouTube
• 13 minutes
• Self-Paced
• Free Video