Bioinformagician Courses

WGS Variant Calling - Variant Calling with GATK - Part 1 - Detailed NGS Analysis Workflow

1 review

Detailed tutorial on variant calling from WGS data using GATK best practices, covering quality control, alignment, duplicate marking, base recalibration, and variant discovery with HaplotypeCaller.

• YouTube
• 48 minutes
• On-Demand
• Free Video

Understanding File Formats in Bioinformatics - VCF and gVCF

1 review

Comprehensive guide to VCF and gVCF file formats in bioinformatics, covering structure, interpretation, and key concepts like genotypes, alleles, and variant recording for genomic analysis.

• YouTube
• 26 minutes
• On-Demand
• Free Video

Survival Analysis with TCGA Data in R - Create Kaplan-Meier Curves

Learn survival analysis using TCGA data in R, including Kaplan-Meier curves. Covers key concepts, data preparation, and practical implementation using survival and survminer packages.

• YouTube
• 44 minutes
• On-Demand
• Free Video

Automatic Cell-Annotation for Single-Cell RNA-Seq Data Using a Reference Dataset - A SingleR Tutorial

Learn to annotate cell types in single-cell RNA-Seq data using SingleR. Explore annotation strategies, reference datasets, and diagnostic tools for accurate cell type assignment and visualization.

• YouTube
• 34 minutes
• On-Demand
• Free Video

Automatic Cell Annotation for Single-Cell RNA-Seq Data - Multiple Reference Strategies in SingleR - Part 2

Explore advanced cell-annotation techniques for single-cell RNA-Seq data using SingleR, including multiple reference datasets, visualization strategies, and harmonized labeling approaches.

• YouTube
• 33 minutes
• On-Demand
• Free Video

Introduction to Motif Discovery and Transcription Factor Binding Site Analysis

Comprehensive guide to motif discovery and transcription factor binding site analysis, covering basics, tools, and practical demonstrations using Homer software for ChIP-seq data analysis.

• YouTube
• 52 minutes
• On-Demand
• Free Video

WGS Variant Calling - Variant Filtering and Annotation - Part 2 - Detailed NGS Analysis Workflow

Detailed tutorial on filtering and annotating genetic variants using GATK tools. Covers hard filtering, genotype refinement, and Funcotator for comprehensive variant analysis in bioinformatics workflows.

• YouTube
• 43 minutes
• On-Demand
• Free Video

Weighted Gene Co-expression Network Analysis - Step-by-Step Tutorial - Part 1

Learn step-by-step Weighted Gene Co-expression Network Analysis (WGCNA) for RNA-Seq data, covering data manipulation, outlier detection, normalization, module identification, and visualization techniques.

• YouTube
• 36 minutes
• On-Demand
• Free Video

Single-Cell Trajectory Analysis Using Monocle3 and Seurat - Step-by-Step Tutorial

Step-by-step tutorial on single-cell trajectory analysis using Monocle3 and Seurat. Covers theory, workflow, and practical implementation in R, including data processing, visualization, and gene expression analysis along trajectories.

• YouTube
• 49 minutes
• On-Demand
• Free Video

Setup RNA-Seq Pipeline From Scratch - Fastq to Counts - Step-by-Step Tutorial

Step-by-step tutorial on processing RNA-Seq data: quality control, trimming, alignment, and quantification. Covers tools like FastQC, Trimmomatic, HISAT2, and featureCounts, with comparisons of aligners and best practices.

• YouTube
• 32 minutes
• On-Demand
• Free Video

Bioinformatics and Computational Biology - The Present Gateway to Research

Comprehensive overview of bioinformatics and computational biology, covering research fields, career paths, applications, job prospects, and educational opportunities for aspiring professionals in this cutting-edge domain.

• YouTube
• 1 hour 2 minutes
• On-Demand
• Free Video

Pseudo-Bulk Analysis for Single-Cell RNA-Seq Data - Detailed Workflow Tutorial

Comprehensive tutorial on pseudo-bulk analysis for single-cell RNA-Seq data, covering the what, why, and how. Includes data manipulation, aggregation, and differential expression analysis using R, Seurat, and DESeq2.

• YouTube
• 36 minutes
• On-Demand
• Free Video

Find Markers and Cluster Identification in Single-Cell RNA-Seq Using Seurat - Workflow Tutorial

Comprehensive tutorial on identifying cell markers in single-cell RNA-Seq data using Seurat, covering various marker identification methods, data visualization, and cluster annotation techniques.

• YouTube
• 34 minutes
• On-Demand
• Free Video

Integrate Single-Cell RNA-Seq Datasets in R Using Seurat - Detailed Seurat Workflow Tutorial

Comprehensive tutorial on integrating single-cell RNA-Seq datasets using Seurat in R, covering data merging, batch effect correction, and visualization techniques for improved analysis.

• YouTube
• 34 minutes
• On-Demand
• Free Video

DESeq2 Basics Explained - Differential Gene Expression Analysis - Bioinformatics 101

Comprehensive guide to DESeq2 for differential gene expression analysis in RNA-seq data, covering statistical models, normalization methods, and key steps in the analysis pipeline.

• YouTube
• 26 minutes
• On-Demand
• Free Video