Overview
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Learn about a representation-based architecture for DNA data storage that leverages deep learning models to achieve robust image reconstruction from noisy DNA reads. Discover how this innovative approach combines an autoencoder and U-Net network to handle representation, construction, and refinement of images stored in DNA, demonstrating successful reconstruction with insertion-deletion-substitution error rates below 6%. Explore the flexible compression capabilities through feature quantization that allows balanced trade-offs between compression ratio and image quality by adjusting representation channel numbers. Understand how multiple DNA reads can enhance image quality reconstruction and examine real-world validation through wet lab experiments that successfully reconstructed images stored across 14 plasmids. Gain insights into this competitive solution for robust and efficient DNA storage systems designed for large-scale image applications, presented by Qingyuan Fan from Southern University of Science and Technology, China at the 2025 Storage and Computing with DNA Conference.
Syllabus
Robust and Private Nanopore DNA Readout via Advanced Codec Design and De Novo Basecalling
Taught by
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