Overview
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Explore advanced techniques for accelerating bioinformatics workloads in this 27-minute conference talk from the Computational Genomics Summer Institute. Learn about cutting-edge hardware acceleration methods for genome analysis, including universal pre-alignment filters for CPUs, GPUs, and FPGAs, and discover how approximate string matching frameworks can provide low-power, memory-efficient solutions for genome sequence analysis. Examine the development of universal hardware accelerators for genomic sequence-to-graph and sequence-to-sequence mapping, and gain insights into the ongoing journey of optimizing computational genomics workflows through innovative acceleration strategies that address the growing computational demands of modern bioinformatics applications.
Syllabus
Can Alkan | Acceleration of bioinformatics workloads | CGSI 2025
Taught by
Computational Genomics Summer Institute CGSI