Computational Genomics Courses and Certifications

Algorithms for DNA Sequencing

17 ratings

Implement algorithms and data structures in Python to analyze real DNA sequencing data: exact and approximate matching with Boyer-Moore, edit distance, read alignment, and genome assembly.

• Coursera
• 4 weeks, 3 hours a week
• Self-Paced
• Paid Course

San Diego State University

Computational Genomics

Explore genome sequencing technologies, DNA assembly, BLAST alignment, k-mer algorithms, and metagenomic analysis through computational genomics exercises.

• YouTube
• 6 hours
• Self-Paced
• Free Video

Career Certificate

Data Analysis for Genomics

Learn advanced techniques to analyze genomics data

• edX
• 13 weeks, 2-4 hours a week
• Self-Paced
• $591.00
• 3 courses

Machine Learning for Genomics Fall 2020

1 rating

Fall 2020 Prof. Manolis Kellis Computational Biology: Genomes, Networks, Evolution, Health Machine Learning in Genomics: Dissecting the circuitry of Human Disease

• YouTube
• 1 day 8 hours
• Self-Paced
• Free Video

Machine Learning in Genomics - Fall 2019

A broad computational genomics survey applying dynamic programming, hidden Markov models, clustering, and deep learning to genomic data.

• YouTube
• 1 day 10 hours
• Self-Paced
• Free Video

Bioinformagician

WGS Variant Calling - Variant Calling with GATK - Part 1 - Detailed NGS Analysis Workflow

1 rating

Follow a GATK best-practice workflow to process whole-genome sequencing reads and call SNPs and indels into a VCF file.

• YouTube
• 48 minutes
• Self-Paced
• Free Video

Bioinformagician

Understanding File Formats in Bioinformatics - VCF and gVCF

1 rating

Learn to read VCF and gVCF files, interpret variant records and genotypes, and understand genomic variation in variant-calling workflows.

• YouTube
• 26 minutes
• Self-Paced
• Free Video

Bioinformagician

WGS Variant Calling - Variant Filtering and Annotation - Part 2 - Detailed NGS Analysis Workflow

Filter germline variants using site- and genotype-level criteria, then annotate them with GATK Funcotator for downstream analysis.

• YouTube
• 43 minutes
• Self-Paced
• Free Video

Ambry Genetics

Review Tools of UCSC Genome Browser - Clinical Diagnostic Series - Webinar - Ambry Genetics

A live tour of UCSC Genome Browser tools for visualizing genomic data and extracting information through the Table Browser.

• YouTube
• 49 minutes
• Self-Paced
• Free Video

Swiss Institute of Bioinformatics

SwissRegulon Portal - Tools and Data for Regulatory Genomics

Explore SwissRegulon tools for regulatory-site annotation, ChIP-seq analysis, regulatory-network inference, and phylogeny reconstruction.

• YouTube
• 7 hours
• Self-Paced
• Free Video

Swiss Institute of Bioinformatics

Learn About SwissOrthology - Orthology Prediction Tool

Explore orthology prediction through SwissOrthology, OMA, and OrthoDB, with comparative genomics, phylogenetics, and tree visualization.

• YouTube
• 6 hours
• Self-Paced
• Free Video

Bioinformatics Coach

BCFtools Tutorials

Use bcftools to read, inspect, index, modify, split, and call variants in VCF files.

• YouTube
• 3 hours 30 minutes
• Self-Paced
• Free Video

Bioinformatics Coach

Post-Genome Assembly

Learn to annotate, visualize, compare, and analyze bacterial genomes with PROKKA, PGAP, Abricate, phylogenetic tools, and variant-calling workflows.

• YouTube
• 8 hours
• Self-Paced
• Free Video

Bioinformatics Coach

Genome Comparative Analysis

Hands-on bacterial genome tutorials cover comparative genomics, pangenome analysis, phylogenetic trees, genome visualization, assembly, and antimicrobial-resistance gene identification.

• YouTube
• 4 hours 30 minutes
• Self-Paced
• Free Video

Bioinformatics Coach

Whole Genome Sequence Analysis

Beginner tutorials for assembling bacterial genomes, identifying antimicrobial resistance genes, building phylogenetic trees, and calling variants from microbial sequence data.

• YouTube
• 3 hours 30 minutes
• Self-Paced
• Free Video