Single-Cell Analysis Courses and Certifications

Valence Labs

scAgents - A Multi-Agent Framework for Fully Autonomous End-to-End Single-Cell Perturbation Analysis

Discover how scAgents revolutionizes single-cell genomics through autonomous multi-agent AI that transforms raw data into optimized models, outperforming existing methods by up to 49%.

• YouTube
• 59 minutes
• Self-Paced
• Free Video

Birla Institute Of Technology And Science–Pilani (BITS–Pilani)

Introduction to Bioinformatics

10 ratings at Coursera

Discover bioinformatics fundamentals through hands-on analysis of RNA-seq, single-cell genomics, gene associations, and medical text mining using real datasets from NCBI, TCGA, and PubMed.

• Coursera
• 1 day 7 hours 35 minutes
• Self-Paced
• Paid Course

Pediatric Grand Rounds (RECORDING) Predicting Patient Outcomes from Single Cells in Childhood Cancer

Explore cutting-edge single-cell analysis techniques to identify treatment-resistant cells in childhood acute lymphoblastic leukemia, aiming to improve outcomes and prevent relapse.

• Independent
• Self-Paced
• Free Online Course

Bioinformagician

Pseudo-Bulk Analysis for Single-Cell RNA-Seq Data - Detailed Workflow Tutorial

Comprehensive tutorial on pseudo-bulk analysis for single-cell RNA-Seq data, covering the what, why, and how. Includes data manipulation, aggregation, and differential expression analysis using R, Seurat, and DESeq2.

• YouTube
• 36 minutes
• Self-Paced
• Free Video

Broad Institute

MPG Primer: Understanding Single Cell ATAC-Seq Data Analysis (2024)

Explore single-cell ATAC-seq data analysis, covering key concepts, workflow, quality control, and downstream analysis techniques for epigenomic profiling at cellular resolution.

• YouTube
• 45 minutes
• Self-Paced
• Free Video

Deep Learning in Life Sciences - Spring 2021

1 rating

Explore cutting-edge applications of deep learning in genomics, drug design, protein folding, pathology, and neuroscience. Gain insights into AI's transformative potential in life sciences research and healthcare.

• YouTube
• 1 day 7 hours
• Self-Paced
• Free Video

Manolis Kellis

Single Cell Analysis in Computational Biology - Lecture 3

Comprehensive exploration of single-cell RNA sequencing, covering technologies, applications, and analysis techniques. Discusses advantages over bulk sequencing and addresses key biological questions in the field.

• YouTube
• 1 hour 20 minutes
• Self-Paced
• Free Video

International Centre for Theoretical Sciences

Novel Statistical and Machine Learning Methods for Single Cell Data Analysis

Explore innovative statistical and machine learning techniques for analyzing single-cell data, enhancing understanding of cellular heterogeneity and biological processes at unprecedented resolution.

• YouTube
• 1 hour 6 minutes
• Self-Paced
• Free Video

Bioinformagician

Comprehensive Guide to Downstream Analysis for Single-Cell ATAC-Seq in R - scATAC-Seq Workflow

Comprehensive guide for downstream analysis of single-cell ATAC-Seq data using R and Signac. Covers integration with RNA-Seq, differential accessibility analysis, and visualization of genomic regions.

• YouTube
• 33 minutes
• Self-Paced
• Free Video

Labroots

Identification of Tumor-Reactive T Cell Receptors Through Functional Single Cell Interaction Analysis for Personalized T Cell Therapy

Explore innovative techniques for identifying tumor-reactive T cell receptors using single-cell analysis, advancing personalized cancer immunotherapy approaches for multiple myeloma patients.

• YouTube
• 23 minutes
• Self-Paced
• Free Video

BIMSA

scverse: An Introduction to Single-Cell Data Analysis in Python

Explore Python's ecosystem for single-cell data analysis with scverse, a community-driven initiative coordinating omics data work.

• YouTube
• 44 minutes
• Self-Paced
• Free Video

Erwin Schrödinger International Institute for Mathematics and Physics (ESI)

Geometry of Single-Cell Trajectories in RNA Sequencing Analysis

Explore the mathematical foundations of RNA sequencing analysis and trajectory inference, focusing on geometric approaches to understanding cellular differentiation through vector field analysis.

• YouTube
• 21 minutes
• Self-Paced
• Free Video

Broad Institute

Single-Cell Multiome Technology and Analysis Methods - 2025

Discover cutting-edge single-cell multiome technology and analysis methods for medical and population genetics research, focusing on complex trait genetics and human population studies.

• YouTube
• 51 minutes
• Self-Paced
• Free Video

Broad Institute

Single-cell Multiome Technology and Analysis Methods

Discover cutting-edge single-cell multiome technology and analysis methods for medical and population genetics research, focusing on complex trait genetics, human variation, and disease studies.

• YouTube
• 51 minutes
• Self-Paced
• Free Video

Manolis Kellis

Machine Learning in Computational Biology Fall 2024

Explore machine learning applications in computational biology, covering single-cell analysis, protein folding, drug development, genomics, and metabolic modeling techniques.

• YouTube
• 1 day 6 hours 55 minutes
• Self-Paced
• Free Video