Molecular Docking with AutoDock VINA - Script-Based Method for Multiple Ligands
Bioinformatics With BB via YouTube
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Learn how to perform molecular docking using AutoDock VINA in this comprehensive tutorial. Explore virtual screening techniques to identify potential lead compounds from large libraries of small molecules. Discover the process of docking ligands into protein binding sites, calculating binding energies, and ranking compounds based on their predicted interactions. Master the use of tools like MGL Tools, AutoDock Vina, and OpenBabel for preparing and executing docking simulations. Gain insights into post-processing techniques to filter and prioritize promising compounds for further experimental testing. Follow step-by-step instructions on installing necessary software, retrieving ligand molecules, downloading crystal structures, building models, and preparing files for docking analysis.
Syllabus
Introduction
Installation
Retrieve Ligand Molecule
Download Crystal Structure
Build Model
Preparation
Taught by
Bioinformatics With BB
Reviews
4.5 rating, based on 2 Class Central reviews
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The molecular docking course gave me a strong foundation in structure-based drug design. We started with the basics of proteins, ligands, and binding sites, then moved to practical tools like AutoDock Vina, PyMOL, and Chimera. I learned how to do pr…
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The "Molecular Docking with AutoDock VINA - Script-Based Method for Multiple Ligands" course offers a clear, hands-on approach to high-throughput molecular docking. It effectively covers the automation process using scripts, making it ideal for user…