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Molecular Docking and Virtual Screening with AutoDock VINA - Bioinformatics Tutorial

Bioinformatics With BB via YouTube

Overview

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Learn molecular docking techniques using AutoDock VINA for virtual screening in this comprehensive bioinformatics tutorial. Explore the process of identifying lead compounds from large libraries of small molecules through virtual docking into target binding sites. Understand the principles of conformational space exploration, scoring functions, and free energy calculations in ligand-protein interactions. Discover how to post-process and filter docking results to select promising compounds for experimental assays. Gain hands-on experience with tools like MGL Tools, AutoDock Vina, OpenBabel, and Perl scripting. Delve into the advantages of AutoDock Vina over AutoDock 4 for improved binding mode prediction accuracy. Access provided resources, including software links and relevant scientific literature, to enhance your understanding of molecular docking in drug discovery and bioinformatics research.

Syllabus

Introduction
Advantages
Prerequisites
Files needed
Example
Binding Location
Installation
Perl Installation

Taught by

Bioinformatics With BB

Reviews

5.0 rating, based on 1 Class Central review

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  • The molecular docking course I completed was very helpful for beginners in computational drug discovery. It clearly explained key concepts like protein and ligand preparation, binding site identification, and how to run docking using tools such as AutoDock/Vina. The step-by-step lessons made complex ideas easier to follow, even with limited prior experience. Practical demonstrations and real examples helped reinforce learning, and by the end I could perform basic docking and interpret results confidently. However, some sections assumed biology fundamentals, so a little background knowledge made the course easier to grasp overall.

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