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YouTube

Broad/Illumina Genome Analyzer Boot Camp - Chemistry and Workflows

Broad Institute via YouTube

Overview

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Learn the comprehensive chemistry and workflows for operating the Illumina Genome Analyzer through this intensive boot camp covering sample preparation, cluster generation, sequencing processes, and data management. Master the fundamental techniques including DNA shearing, size selection, SPRI purification, and sample tracking protocols essential for successful genomic sequencing. Explore cluster generation chemistry, QPCR optimization, quality control measures using SYBR, and troubleshooting common failure modes encountered during the process. Understand sequencing chemistry principles, first base incorporation protocols, and workflow optimization strategies used in high-throughput genomic analysis. Gain practical experience through hands-on laboratory demonstrations showing sample preparation techniques, cluster generation procedures, and sequencing operations. Develop proficiency in data pipeline workflows, file management systems, and troubleshooting methodologies for analyzing sequencing output and resolving technical issues that may arise during genome analyzer operations.

Syllabus

GA Boot Camp: Illumina -- Sample Preparation (Chemistry)
GA Boot Camp: Sample Preparation (Tracking, Shearing, Diversity, Size Selection, SPRI)
GA Boot Camp: Lab 1a Video
GA Boot Camp: Lab 1b video
GA Boot Camp: Illumina -- Cluster Generation (Chemistry)
GA Boot Camp: Broad -- Cluster Generation (QPCR, Controls, SYBR QC)
GA Boot Camp: Lab 2 Video, cluster generation
GA Boot Camp: Illumina -- Sequencing (Chemistry)
GA Boot Camp: Broad -- Sequencing (Workflow, 1st base, Failure Mode Gallery)
GA Boot Camp: Lab 3a Video, Sequencing
GA Boot Camp: Lab 3b Video, sequencing
GA Boot Camp: Illumina -- Working with Data (Pipeline workflow)
GA Boot Camp: Broad -- Working with Data (Troubleshooting, Data files, Concepts)

Taught by

Broad Institute

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