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Genomics2Proteins Portal - Linking Genetic Screening to Protein Structure and Function

Broad Institute via YouTube

Overview

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Tutorial series demonstrating how to use the Genomics2Proteins (G2P) Portal, a discovery tool developed by the Broad Institute that links genetic screening outputs to protein sequence and structure. Learn to visualize human genetic variations from databases like gnomAD, ClinVar, and HGMD alongside protein sequence annotations from UniProt, all pre-mapped on protein sequences and structures. Master interactive and automated mapping techniques for variations, protein features, and functional genomic assay readouts including saturation mutagenesis data. Explore comprehensive workflows starting from human gene/protein identifiers or protein structures, investigate protein-level effects of non-canonical transcript variants, and analyze conservation patterns in viral protein structures. Discover how to link genetic constraint scores to protein structures, map functional data for exploring protein-protein interactions in bacterial complexes, and analyze E3 ubiquitin ligase variants. Access training on the Protein Feature Viewer interface, learn to use G2P Portal APIs for large-scale bioinformatics applications, and work through practical case studies demonstrating real-world applications of this genomics-to-proteomics analysis platform.

Syllabus

11. Investigate protein-level effect of a non-canonical transcript variant KIF2A:p.Gly478Arg (VUS)
10. Interactive Module: Demo Workflow for Starting with a Protein Structure
9. Interactive Module: Demo Workflow for Starting with a Human Gene/Protein Identifier
8. How to use Genomics 2 Proteins Portal APIs for Large-scale Bioinformatics Applications
7. Interactive mapping of functional data on structure to explore PPIs in E. coli Mla complex
6. Interactive mapping and analysis of E3 ubiquitin ligase TRIP12 Variants on protein structure
5. Introducing the Protein Feature Viewer in the Genomics 2 Proteins (G2P) Portal
4. Analyze the conservation of a viral protein structure using the Genomics 2 Proteins portal
3. How to link genetic constraint score from gene of interest to protein structure using G2P Portal
2. Introduction to the "Interactive Mapping" by the G2P Portal
1. Introduction to the Genomics 2 Proteins (G2P) portal, version 1.0

Taught by

Broad Institute

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