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Yale University

Freshman Organic Chemistry II

Yale University via YouTube

Overview

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Advance your understanding of organic chemistry through this comprehensive second-semester course that builds upon foundational concepts to explore complex reaction mechanisms, spectroscopy, and organic synthesis. Delve into the intricate world of reaction kinetics, examining how energies and kinetic order influence reaction rates, while mastering peculiar rate laws and bond dissociation energies. Explore radical-chain reactions, electronegativity effects, and the crucial role of solvation and hydrogen bonding in chemical processes. Master nucleophilic substitution mechanisms through detailed analysis of stereochemistry, rate laws, and the influence of substrates, nucleophiles, solvents, and leaving groups. Investigate cation intermediates and the formation, addition, and stability of alkenes, progressing to carbocations and electrophilic addition mechanisms. Study advanced topics including three-membered ring formation through carbenoids and epoxidation, epoxide opening reactions, and dipolar cycloaddition processes. Examine the role of metals and catalysis in alkene oxidation, hydrogenation, metathesis, and polymerization, while exploring isoprenoids, rubber chemistry, and polymer property tuning. Analyze conjugation in allylic intermediates and dienes, advancing to linear and cyclic conjugation theory and the 4n+2 aromaticity rule. Master aromatic transition states in cycloaddition and electrocyclic reactions, then transition to spectroscopic analysis through electronic and vibrational spectroscopy techniques. Gain proficiency in IR spectroscopy for functional group identification and explore the principles of medical MRI and chemical NMR, including diamagnetic anisotropy and spin-spin splitting effects. Study higher-order NMR effects, dynamics, and time scale considerations, progressing to C-13 and 2D NMR techniques. Explore electrophilic aromatic substitution reactions and their synthetic applications, including Friedel-Crafts reactions and historical perspectives through Moses Gomberg's work. Investigate triphenylmethyl chemistry as an introduction to carbonyl chemistry, examining reaction mechanisms and equilibria. Master imine and enamine chemistry alongside oxidation and reduction processes, understanding oxidation states and reaction mechanisms. Apply retrosynthetic analysis principles and green chemistry concepts to complex synthetic challenges, including periodate cleavage reactions. Examine acids and acid derivatives in detail, exploring acyl insertions and α-reactivity patterns in condensation reactions. Conclude with advanced applications including glucose configuration determination and the synthesis of unnatural products, culminating in a comprehensive review of cortisone synthesis that integrates all learned concepts.

Syllabus

1. Mechanism: How Energies and Kinetic Order Influence Reaction Rates
2. Peculiar Rate Laws, Bond Dissociation Energies, and Relative Reactivities
3. Rate and Selectivity in Radical-Chain Reactions
4. Electronegativity, Bond Strength, Electrostatics, and Non-Bonded Interactions
5. Solvation, H-Bonding, and Ionophores
6. Brønsted Acidity and the Generality of Nucleophilic Substitution
7. Nucleophilic Substitution Tools - Stereochemistry, Rate Law, Substrate, Nucleophile
8. Solvent, Leaving Group, Bridgehead Substitution, and Pentavalent Carbon
9. Pentavalent Carbon? E2, SN1, E1
10. Cation Intermediates. Alkenes: Formation, Addition, and Stability
11. Carbocations and the Mechanism of Electrophilic Addition to Alkenes and Alkynes
12. Nucleophilic Participation During Electrophilic Addition to Alkenes
13. Addition to Form Three-Membered Rings: Carbenoids and Epoxidation
14. Epoxide Opening, Dipolar Cycloaddition, and Ozonolysis
15. Metals and Catalysis in Alkene Oxidation, Hydrogenation, Metathesis, and Polymerization
16. Isoprenoids, Rubber, and Tuning Polymer Properties
17. Alkynes. Conjugation in Allylic Intermediates and Dienes
18. Linear and Cyclic Conjugation Theory. 4n+2 Aromaticity
19. Aromatic Transition States: Cycloaddition and Electrocyclic Reactions
20. Electronic and Vibrational Spectroscopy
21. Functional Groups and Fingerprints in IR Spectroscopy. Precession of Magnetic Nuclei
22. Medical MRI and Chemical NMR
23. Diamagnetic Anisotropy and Spin-Spin Splitting
24. Higher-Order Effects, Dynamics, and the NMR Time Scale
25. C-13 and 2D NMR. Electrophilic Aromatic Substitution
26. Aromatic Substitution in Synthesis: Friedel-Crafts and Moses Gomberg
27. Triphenylmethyl and an Introduction to Carbonyl Chemistry
28. Mechanism and Equilibrium of Carbonyl Reactions
29. Imines and Enamines. Oxidation and Reduction
30. Oxidation States and Mechanisms
31. Periodate Cleavage, Retrosynthesis, and Green Chemistry
32. Measuring Bond Energies: Guest Lecture by Prof. G. Barney Ellison
33. Green Chemistry. Acids and Acid Derivatives
34. Acids and Acid Derivatives
35. Acyl Insertions and [gr]α-Reactivity
36. [gr]α-Reactivity and Condensation Reactions
37. Proving the Configuration of Glucose and Synthesizing Two Unnatural Products
38. Review: Synthesis of Cortisone

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