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Simple PCA analysis with PLINK
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Classroom Contents
Genomic Data Analysis for Beginners
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- 1 Genomic data analysis for beginners - a playlist introduction
- 2 What is a SNP? | Single nucleotide polymorphism (SNP) data in theory and practice
- 3 Genomics in practice - SNP genotype data files
- 4 Genomics in practice - How to start PLINK
- 5 Genomics in practice - Introduction to R and RStudio
- 6 Genomics in practice - Genotype data format change with PLINK
- 7 Genomics in practice - SNP data quality control with PLINK
- 8 Genomics in practice - Principal component analysis (PCA) based on SNP data
- 9 Simple PCA analysis with PLINK
