Phylogenetic Analysis Courses and Certifications

Hacking COVID-19 — Course 5: Tracing SARS-CoV-2's Evolution

Trace SARS-CoV-2's evolution: perform multiple sequence alignment, phylogenetic inference, and tree rooting and dating to test the "Italy First" hypothesis of COVID-19 origins.

• Coursera
• 2 weeks, 2 hours a week
• Self-Paced
• Paid Course

Bioinformatic Methods I

9 ratings

Use web-based bioinformatics tools to search NCBI databases, run BLAST, build multiple sequence alignments with Clustal, MUSCLE and MAFFT, infer phylogenies, and explore RNA-seq and metagenome data.

• Coursera
• 8 weeks, 2 hours a week
• Self-Paced
• Paid Course

Bioinformatics Coach

Phylogenetic Trees

2 ratings

Build phylogenetic trees from gene sequences with MUSCLE, PhyML, and RAxML, then visualize them using iTOL.

• YouTube
• 1 hour 30 minutes
• Self-Paced
• Free Video

Career Certificate

Plant Bioinformatic Methods

2153 ratings at Coursera

Use 33 plant-specific web tools alongside Genbank, BLAST, multiple sequence alignments, phylogenetics and RNA-seq analysis to hypothesize a biological role for a gene of unknown function.

• Coursera
• 8 weeks, 10 hours a week
• Self-Paced
• Paid Course
• 4 courses

Bacterial Bioinformatics

322 ratings at Coursera

Assemble, annotate, and compare bacterial genomes in BV-BRC: build codon-based phylogenetic trees, find similar genomes, and run protein family and proteome comparisons.

• Coursera
• 8 weeks, 2 hours a week
• Self-Paced
• Free Online Course

Hacking COVID-19 — Course 3: Unraveling COVID-19's Origins

Use multiple sequence alignment and maximum-likelihood phylogenetic inference on SARS-CoV-2 genomes to test the artificial origin, direct zoonotic transfer, and intermediate host hypotheses.

• Coursera
• 2 weeks, 3 hours a week
• Self-Paced
• Paid Course

Learn Bioinformatics From Scratch (Theory & Practical)

3065 ratings at Udemy

Best Bioinformatics course for Students, Academia and Industry Professionals to learn Bioinformatics and biological data

• Udemy
• 8 hours 30 minutes
• Self-Paced
• Paid Course

NPTEL-NOC IITM

Phylogenetic Analysis of Bacterial Genomes

Explore concepts in phylogenetics, including rationale and various analysis methods for bacterial genomes.

• YouTube
• 23 minutes
• Self-Paced
• Free Video

系统发育学原理与方法

系统发育学：进化论与统计学的完美结合！ Phylogeny: the perfect combination of Evolution and Statistics

• XuetangX
• Self-Paced
• Free Online Course

LiquidBrain Bioinformatics

rRNA Sequencing Analysis and Visualization

Analyze 16S rRNA microbiome data through OTU clustering, diversity analysis, PCA, phylogenetic trees, and taxonomy visualizations.

• YouTube
• 44 minutes
• Self-Paced
• Free Video

Richard McElreath

Statistical Rethinking 2023 - Gaussian Processes

Explore Gaussian processes for spatial confounds and phylogenetic regression through statistical modeling.

• YouTube
• 1 hour 22 minutes
• Self-Paced
• Free Video

Richard McElreath

Statistical Rethinking 2022 - Gaussian Processes

Explores Gaussian processes through spatial confounding, covariance, and applications to oceanic data and primate phylogeny.

• YouTube
• 1 hour 25 minutes
• Self-Paced
• Free Video

Bioinformatics Coach

Post-Genome Assembly

Learn to annotate, visualize, compare, and analyze bacterial genomes with PROKKA, PGAP, Abricate, phylogenetic tools, and variant-calling workflows.

• YouTube
• 8 hours
• Self-Paced
• Free Video

Bioinformatics Coach

Genome Comparative Analysis

Hands-on bacterial genome tutorials cover comparative genomics, pangenome analysis, phylogenetic trees, genome visualization, assembly, and antimicrobial-resistance gene identification.

• YouTube
• 4 hours 30 minutes
• Self-Paced
• Free Video

Bioinformatics Coach

Whole Genome Sequence Analysis

Beginner tutorials for assembling bacterial genomes, identifying antimicrobial resistance genes, building phylogenetic trees, and calling variants from microbial sequence data.

• YouTube
• 3 hours 30 minutes
• Self-Paced
• Free Video