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Molecular Dynamics

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Master molecular dynamics simulations using GROMACS, path integral methods, and force field analysis to model complex biomolecular systems. Learn through hands-on tutorials on YouTube and advanced courses on edX, covering everything from basic protein simulations to DNA macromolecule dynamics and conformational transitions.

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Materials Cloud
Car-Parrinello Molecular Dynamics - Parallelization Part 2

Explore advanced parallelization techniques for Car-Parrinello molecular dynamics simulations in this 21-minute computational materials science tutorial.
- YouTube
- 21 minutes
- Self-Paced
- Free Video
The Julia Programming Language
Molly.jl - Molecular Dynamics in Julia

Explore Molly.jl for molecular dynamics simulations in Julia. Learn about its features, advantages, and applications in research, including differentiable molecular simulation and force field improvement.
- YouTube
- 30 minutes
- Self-Paced
- Free Video
Erwin Schrödinger International Institute for Mathematics and Physics (ESI)
Computational Science Algorithms and Machine Learning in Molecular Dynamics - Award Lecture

Discover groundbreaking computational science algorithms revolutionizing soft matter, biological, and condensed matter physics through metadynamics and machine learning integration.
- YouTube
- 30 minutes
- Self-Paced
- Free Video
Dense Gases, Liquids and Solids
116 ratings at Coursera

Explore dense gases, liquids, and solids through statistical thermodynamics. Learn about intermolecular forces, phase transitions, radial distribution functions, and crystalline solid models.
- Coursera
- 5 hours 19 minutes
- Self-Paced
- Paid Course
Small-Molecule Spectroscopy and Dynamics
1 rating

The goal of this course is to illustrate the spectroscopy of small molecules in the gas phase
- MIT OpenCourseWare
- 34 hours
- Self-Paced
- Free Video
Atomistic Computer Modeling of Materials (SMA 5107)

Explore atomistic computer simulations for modeling materials, covering energy models, density functional theory, Monte Carlo sampling, molecular dynamics, and coarse-graining approaches with hands-on labs.
- MIT OpenCourseWare
- Self-Paced
- Free Online Course
ATOMS UFRJ
Key Aspects When Modelling Amphiphiles with MARTINI

Explore key aspects of modeling amphiphiles using MARTINI, covering AA-to-CG validation, phase behavior, and transferability in molecular dynamics simulations.
- YouTube
- 43 minutes
- Self-Paced
- Free Video
Bogolyubov Institute for Theoretical Physics
Молекулярна динаміка для фазового переходу рідина-газ - Частина 2

Delve into молекулярну динаміку та фізичні процеси фазового переходу рідина-газ через поглиблений теоретичний аналіз та сучасні дослідження.
- YouTube
- 1 hour 55 minutes
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Bogolyubov Institute for Theoretical Physics
Молекулярна динаміка для фазового переходу рідина-газ

Дослідіть молекулярну динаміку та механізми фазового переходу між рідким і газоподібним станами речовини через поглиблений теоретичний аналіз та моделювання.
- YouTube
- 2 hours 11 minutes
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- Free Video
Bogolyubov Institute for Theoretical Physics
Молекулярна динаміка для фазового переходу рідина-газ - Частина 2

Дослідіть молекулярну динаміку та механізми фазового переходу між рідким і газоподібним станами речовини через поглиблений теоретичний аналіз та моделювання.
- YouTube
- 1 hour 55 minutes
- Self-Paced
- Free Video
Bogolyubov Institute for Theoretical Physics
Молекулярна динаміка для фазового переходу рідина-газ

Дослідіть молекулярну динаміку та механізми фазового переходу між рідким і газоподібним станами речовини через поглиблений теоретичний аналіз та сучасні наукові підходи.
- YouTube
- 2 hours 11 minutes
- Self-Paced
- Free Video
Bogolyubov Institute for Theoretical Physics
Молекулярно-динамічні моделювання колективної динаміки іон-гідратної оболонки подвійної спіралі ДНК

Дослідіть молекулярно-динамічне моделювання колективної поведінки іон-гідратної оболонки ДНК та її вплив на структурну динаміку подвійної спіралі.
- YouTube
- 48 minutes
- Self-Paced
- Free Video
Bogolyubov Institute for Theoretical Physics
Метод класичної молекулярної динаміки в моделюванні властивостей молекули подвійної спіралі ДНК

Dive into classical molecular dynamics methods and their application in modeling DNA double helix properties, exploring computational approaches in modern biophysics research.
- YouTube
- 1 hour 43 minutes
- Self-Paced
- Free Video
Bogolyubov Institute for Theoretical Physics
Флуктуації та Кореляції Частинок у Молекулярній Динаміці

Дослідіть флуктуації та кореляції частинок у системах з потенціалом Ленарда-Джонса, формування кластерів та їх вплив на метастабільні стани в молекулярній динаміці.
- YouTube
- 1 hour 26 minutes
- Self-Paced
- Free Video
APS Physics
Advances in Machine Learned Potentials for Molecular Dynamics Simulation

Explore machine learning advancements in molecular dynamics simulations, covering symmetries, training methods, and applications in hydrocarbon reactions and IR spectra analysis.
- YouTube
- 23 minutes
- Self-Paced
- Conference Talk

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