Computational Genomics Summer Institute CGSI Courses

Applications of Deep Learning to Genomics and Digital Pathology

Explore deep learning applications in genomics and digital pathology, focusing on cutting-edge research and practical implementations in healthcare.

• YouTube
• 41 minutes
• On-Demand
• Free Video

Machine Learning for Biobank-Scale Genomic Data - CGSI 2022

Explore machine learning techniques for analyzing large-scale biobank data, focusing on genetic architecture, variance components, and interactions in complex traits. Gain insights from UK Biobank applications.

• YouTube
• 53 minutes
• On-Demand
• Free Video

A Tutorial on Computational Methods for Modeling and Analyzing Epigenomic Data

Explore computational methods for modeling and analyzing epigenomic data, covering ChromHMM, multivariate Hidden Markov Models, and integrating multiple chromatin markers across cell types.

• YouTube
• 45 minutes
• On-Demand
• Free Video

Bridging ML Models with Medical Insights for Learning, Inference, and Model Explanation in Radiology

Explore ML models bridging medical insights for radiology applications. Learn about self-supervised representation, progressive exaggeration, contrastive learning, causal analysis, and association tests in medical imaging.

• YouTube
• 50 minutes
• On-Demand
• Free Video

Harnessing Data Geometry for Biomedical Insights

Explore data geometry techniques for biomedical insights, covering manifolds, diffusion operators, and spectral clustering in stem cell development and density estimation.

• YouTube
• 49 minutes
• On-Demand
• Free Video

Personalized Genomic Medicine Using Large-Scale Biobanks Linked with Medical Records

Explore personalized genomic medicine using large-scale biobanks and medical records. Learn about leveraging genomic diversity for discovery and promoting precision health research in diverse populations.

• YouTube
• 53 minutes
• On-Demand
• Free Video

Applying Polygenic Scores at Biobank Scale - CGSI 2022

Explore applying polygenic scores at biobank scale, examining reporting standards, reproducibility, health disparities, and clinical applications in genomic risk prediction.

• YouTube
• 43 minutes
• On-Demand
• Free Video

Population Genetics in an Era of Genomic Health

Explore population genetics' role in genomic health, focusing on electronic health records, personalized medicine, and genetic disease identification in specific populations.

• YouTube
• 49 minutes
• On-Demand
• Free Video

Computational Methods to Quantify Lethal Cancer Evolution

Explore computational methods for quantifying lethal cancer evolution. Gain insights into driver mutations, evolutionary history, and genomic correlates of prostate cancer's epigenetic landscape.

• YouTube
• 44 minutes
• On-Demand
• Free Video

Interpretability and Out-of-Distribution Generalization in Deep Predictive Models

Explore interpretability and out-of-distribution generalization in deep predictive models, focusing on nuisance-induced spurious correlations and real-time Shapley value estimation techniques.

• YouTube
• 41 minutes
• On-Demand
• Free Video

Inference of Gene Regulatory Networks from Bulk and Single Cell Omic Datasets

Explore gene regulatory network inference techniques using bulk and single-cell omic datasets. Learn about integrative approaches, predictive models, and applications in cellular reprogramming and single-cell genomics.

• YouTube
• 42 minutes
• On-Demand
• Free Video

Overview of Rare Variant Analysis in Whole Genome Sequencing Association Studies

Explore rare variant analysis techniques for whole genome sequencing studies. Learn statistical methods, study designs, and powerful tools for uncovering genetic associations in large-scale genomic data.

• YouTube
• 39 minutes
• On-Demand
• Free Video

Inference Methods for High-Throughput CRISPR Screens - CGSI 2022

Explore inference methods for high-throughput CRISPR screens, focusing on regulatory gene discovery in human T cells and the architecture of immune networks.

• YouTube
• 46 minutes
• On-Demand
• Free Video

How Genetics Can Help Untangle Institutionalized Health Inequity

Explore how genetic research can address health inequities, focusing on case studies involving racial disparities in medical diagnoses and treatment decisions.

• YouTube
• 42 minutes
• On-Demand
• Free Video

Disease Trajectories of Severe Mental Illness

Explore geospatial analysis of severe mental illness, uncovering distinct hotspots and disease trajectories through computational genomics techniques.

• YouTube
• 48 minutes
• On-Demand
• Free Video