Computational Genomics Summer Institute CGSI Courses

Challenges in Developing a Universal Metagenomic Diagnostic Test - 2024

Explore challenges in creating a universal metagenomic diagnostic test for disease detection, focusing on scalability, sensitivity, and application in community surveillance.

• YouTube
• 44 minutes
• Self-Paced
• Free Video

Project Logan: Assembling All Public Sequencing Data

Explore Project Logan's ambitious goal of assembling all public sequencing data. Learn about innovative techniques and challenges in large-scale genomic data processing and analysis.

• YouTube
• 35 minutes
• Self-Paced
• Free Video

Applications of K-mers in Computational Genomics - CGSI 2024

Explore applications of k-mers in computational genomics, focusing on efficient data structures and algorithms for large-scale sequence analysis and comparison.

• YouTube
• 25 minutes
• Self-Paced
• Free Video

Controlling False Discoveries in Genomics Data Analysis - What is the Null Hypothesis?

Explore advanced techniques for controlling false discoveries in genomics data analysis, focusing on null hypothesis formulation and its impact on statistical inference in high-dimensional biological datasets.

• YouTube
• 29 minutes
• Self-Paced
• Free Video

Evolutionary Models for Cancer and Lineage Tracing - CGSI 2023

Explore evolutionary models for cancer and lineage tracing, focusing on tumor phylogeny inference and CRISPR-Cas9 lineage tracing approaches.

• YouTube
• 31 minutes
• Self-Paced
• Free Video

Observational Causal Inference for Improving and Auditing ML in Healthcare

Explore observational causal inference techniques to enhance and audit machine learning models in healthcare, focusing on distribution shifts, safe policy learning, and robust off-policy evaluation.

• YouTube
• 24 minutes
• Self-Paced
• Free Video

Selective Inference for Computational Genomics - CGSI 2023

Explore selective inference techniques for computational genomics, focusing on false discovery rate control, conformal prediction, and data-driven hypothesis weighting in genome-scale testing.

• YouTube
• 31 minutes
• Self-Paced
• Free Video

Tumor Evolution: Methods for Comparing, Summarizing and Visualizing Clonal Trees

Explore methods for comparing, summarizing, and visualizing clonal trees in tumor evolution, focusing on weighted distance-based approaches and relaxing infinite sites assumptions.

• YouTube
• 33 minutes
• Self-Paced
• Free Video

Inferring Parsimonious Migration Histories for Metastatic Cancers

Explore computational methods for inferring cancer metastasis patterns, focusing on parsimonious migration histories and multi-strain infections in tumor evolution.

• YouTube
• 31 minutes
• Self-Paced
• Free Video

Polygenic Means to Test and Refine Depression Disease Models

Explore polygenic methods for testing and refining depression disease models, focusing on phenotype integration, symptom differences, genetic heterogeneity, and epistasis in complex traits.

• YouTube
• 31 minutes
• Self-Paced
• Free Video

Genome-wide Prediction of Disease Variants with a Deep Protein Language Model

Explore genome-wide prediction of disease variants using deep protein language models. Learn cutting-edge techniques for identifying potential genetic causes of diseases.

• YouTube
• 32 minutes
• Self-Paced
• Free Video

Applications of Deep Learning in Digital Pathology and Embryology - CGSI 2023

Explore deep learning applications in digital pathology and embryology, focusing on AI-driven blastocyst ploidy prediction and tumor purity assessment from H&E slides.

• YouTube
• 42 minutes
• Self-Paced
• Free Video

Confounding in Biobanks: Challenges and Implications

Explore confounding factors in biobank research and their impact on genetic studies, focusing on educational attainment and height analyses.

• YouTube
• 45 minutes
• Self-Paced
• Free Video

Training Highly Generalizable Biomedical Image Segmentation Models with Very Few Annotations

Learn highly generalizable biomedical image segmentation techniques using minimal annotations, focusing on efficient model training and performance optimization for medical imaging tasks.

• YouTube
• 28 minutes
• Self-Paced
• Free Video

From Population to Person - How to Help a Single, Actual Person with Data Science

Discover how data science can be applied to help individual patients, bridging the gap between population-level insights and personalized healthcare interventions.

• YouTube
• 38 minutes
• Self-Paced
• Free Video