Computational Genomics Summer Institute CGSI Courses

Understanding Spurious Feature Learning Through the Lens of Task Difficulty

Explore spurious feature learning in medical imaging and cancer detection, examining prediction depth, task difficulty, and reusable information for improved model understanding.

• YouTube
• 28 minutes
• On-Demand
• Free Video

Fun with Phecodes - From PheWAS to PheRS

Explore Phecodes for electronic health record research, from PheWAS to PheRS. Learn applications, tools, and best practices for phenotype-genotype analysis and biobank data science.

• YouTube
• 29 minutes
• On-Demand
• Free Video

Less is More: Learning Signals to Learn Representations in Healthcare

Explore advancements in machine learning for MRI reconstruction and medical imaging. Discover how less data can yield more accurate representations in healthcare applications.

• YouTube
• 40 minutes
• On-Demand
• Free Video

Divide and Conquer: Carving Out Symbolic Models from BlackBox for More Efficient Domain Adaptation

Explore techniques for extracting symbolic models from black-box systems, enhancing domain adaptation efficiency in computational genomics and medical imaging.

• YouTube
• 32 minutes
• On-Demand
• Free Video

Predicting the Epigenome from DNA Sequence - Are We There Yet?

Explore predicting epigenomes from DNA sequences using deep learning methods. Discover limitations, data analysis techniques, and latest research in computational genomics.

• YouTube
• 33 minutes
• On-Demand
• Free Video

Automated Quantitative Trait Locus Analysis - CGSI 2023

Explore automated quantitative trait locus analysis using machine learning. Learn about genetic architecture, feature engineering, and Pareto optimization for biodata mining and complex trait analysis.

• YouTube
• 30 minutes
• On-Demand
• Free Video

Familywise Error Rate Control for Statistical Testing in Brain Image Ontologies

Explore familywise error rate control in brain image ontologies, covering statistical testing, spatial patterns, and advanced techniques for neuroimaging analysis.

• YouTube
• 38 minutes
• On-Demand
• Free Video

Deep Generative Models in Medicine - CGSI 2023

Explore deep generative models in medicine, covering robustness, interpretability, missing data, language models, and diffusion techniques for improved medical applications and research.

• YouTube
• 32 minutes
• On-Demand
• Free Video

Reliable Machine Learning in Healthcare

Explore reliable machine learning techniques for healthcare applications, focusing on survival models, dependent censoring, and covariate shift detection to enhance medical decision-making.

• YouTube
• 28 minutes
• On-Demand
• Free Video

Combining Biobanks and Cohort Studies - The Best of Both Worlds

Explore the integration of biobanks and cohort studies to enhance genetic research and improve understanding of complex diseases.

• YouTube
• 37 minutes
• On-Demand
• Free Video

Mixed Models in Genomic Analyses and Imaging Studies

Explore mixed models in genomics and imaging, focusing on efficient set tests, Gaussian process priors, gene-environment interactions, and neural networks for histologic feature quantification.

• YouTube
• 36 minutes
• On-Demand
• Free Video

Large Language Models for Computational Biology - A Primer

Explore large language models in computational biology, covering transformers, pretraining, and applications in genomics and single-cell analysis.

• YouTube
• 49 minutes
• On-Demand
• Free Video

Harnessing Genome Dynamics for Phylogenetic Reconstruction

Explore advanced phylogenetic reconstruction techniques using genome dynamics, including horizontal gene transfer, gene content, and microsynteny-based approaches for prokaryotes and angiosperms.

• YouTube
• 56 minutes
• On-Demand
• Free Video

The Poisson Random Field Model in Population Genetics

Explore the Poisson Random Field model's applications in population genetics, gaining insights into its theoretical foundations and practical implications.

• YouTube
• 47 minutes
• On-Demand
• Free Video

Multiscale Metrics for Comparing Spatial Transcriptomics Datasets

Explore multiscale metrics for comparing spatial transcriptomics datasets, enhancing your understanding of advanced genomic analysis techniques.

• YouTube
• 46 minutes
• On-Demand
• Free Video