Computational Genomics Summer Institute CGSI Courses

Digital Phenotyping for Psychiatric Genetics

Explore how wearable devices and AI revolutionize psychiatric genetics research through digital phenotyping methods and genetic association studies.

• YouTube
• 28 minutes
• Self-Paced
• Free Video

Genotype Representation Graph: Enabling Efficient Analysis of Biobank-Scale Data

Dive into efficient analysis of biobank-scale data using Genotype Representation Graphs. Explore innovative methods for estimating coalescence times and inferring whole-genome histories in large population datasets.

• YouTube
• 29 minutes
• Self-Paced
• Free Video

Modeling Alzheimer's Disease Risk in Real World Data

Explore innovative approaches to modeling Alzheimer's disease risk using real-world data, focusing on computational genomics techniques and their applications in understanding disease progression and risk factors.

• YouTube
• 24 minutes
• Self-Paced
• Free Video

Uncovering Cellular Dynamics and Metabolism with Geometric Deep Learning and Optimal Transport

Explore geometric deep learning and optimal transport techniques for uncovering cellular dynamics and metabolism in this insightful computational genomics presentation.

• YouTube
• 27 minutes
• Self-Paced
• Free Video

PBWT-based Algorithms for Large Cohort Genetics - CGSI 2024

Explore PBWT-based algorithms for large cohort genetics, covering efficient haplotype matching, IBD detection, and innovative approaches like d-PBWT and Syllable-PBWT for genomic data analysis.

• YouTube
• 26 minutes
• Self-Paced
• Free Video

Using Classical Algorithms for Modern Applications: MCMC for Tail Calculations, EM - Lecture

Explore classical algorithms applied to modern challenges: MCMC for tail probability estimation and EM for PET reconstruction. Gain insights into innovative adaptations of established methods for cutting-edge problems.

• YouTube
• 29 minutes
• Self-Paced
• Free Video

Using Pooled CRISPR Screens to Study Biology

Explore the application of pooled CRISPR screens in biological research. Gain insights into cutting-edge techniques for studying gene function and cellular processes at a genome-wide scale.

• YouTube
• 30 minutes
• Self-Paced
• Free Video

Uni-alignment: A Parameter-free Framework for Fast and Accurate Sequence Alignment

Explore a parameter-free framework for fast and accurate sequence alignment, focusing on UniAligner's innovative approach to genomic data analysis and its implications for computational biology.

• YouTube
• 47 minutes
• Self-Paced
• Free Video

Inference of Selective Effects and Demographic Histories of Human Gut Commensals - CGSI 2024

Explore the evolutionary dynamics of human gut microbiomes through selective sweeps, rapid evolution, and strain turnover. Gain insights into bacterial adaptation within and across hosts.

• YouTube
• 28 minutes
• Self-Paced
• Free Video

The Real World Phenotypic Presentation of Mendelian Disease - CGSI 2024

Explore the complex real-world phenotypic manifestations of Mendelian diseases through Lisa Bastarache's insightful presentation at CGSI 2024, delving into recent research and clinical implications.

• YouTube
• 38 minutes
• Self-Paced
• Free Video

Reconstructing Every Haplotype with De Novo Assembly

Dive into advanced techniques for reconstructing haplotypes using de novo assembly, exploring cutting-edge methods in computational genomics and bioinformatics.

• YouTube
• 29 minutes
• Self-Paced
• Free Video

On the Problem of Inflation in TWAS and Other xWAS - CGSI 2024

Dive into the challenges of inflation in transcriptome-wide association studies and explore potential solutions in this insightful genomics lecture.

• YouTube
• 31 minutes
• Self-Paced
• Free Video

Categorization of 31 Computational Methods to Detect Spatially Variable Genes from Spatially Resolved Transcriptomics Data

Explore 31 computational methods for detecting spatially variable genes in transcriptomics data, categorized for effective analysis and application in genomics research.

• YouTube
• 50 minutes
• Self-Paced
• Free Video

Introduction to Integer Linear Programming - CGSI 2024

Dive into the fundamentals of Integer Linear Programming with Mohammed El-Kebir, exploring its applications in computational genomics and tumor phylogeny estimation.

• YouTube
• 29 minutes
• Self-Paced
• Free Video

Leveraging Large Datasets and Large Language Models for Healthcare

Explore the intersection of large datasets, language models, and healthcare with insights on ethical considerations and real-world applications in maternal care and contraception.

• YouTube
• 30 minutes
• Self-Paced
• Free Video