Computational Genomics Summer Institute CGSI Courses

Graph and Algebraic Signal Processing Basics for Computational Biology

Explore graph and algebraic signal processing fundamentals for computational biology, covering key concepts, challenges, and applications in genomic data analysis.

• YouTube
• 29 minutes
• On-Demand
• Free Video

Genotyping Allele-Specific Copy Number Variants Using Pangenomes

Explore allele-specific copy number variant genotyping using pangenomes. Learn advanced techniques for analyzing complex genomic variations in human populations.

• YouTube
• 31 minutes
• On-Demand
• Free Video

Computational Methods for Modeling and Analyzing Epigenomic Data - CGSI 2023

Explore computational methods for modeling and analyzing epigenomic data, focusing on chromatin state discovery, genome annotation, and cross-species conservation in functional genomics.

• YouTube
• 43 minutes
• On-Demand
• Free Video

Statistical Reference-Free Genomics Solves Myriad Problems in Bioinformatics - 2023

Explore statistical reference-free genomics to solve bioinformatics challenges. Learn about Splash algorithm, RNA splicing, and novel approaches for analyzing sequencing data in cancer and human disease research.

• YouTube
• 43 minutes
• On-Demand
• Free Video

Inference from Single Cell Lineage Tracing Data Generated via Genome Editing

Explore single-cell lineage tracing via genome editing, covering inference methods, design parameters, and data analysis for understanding cellular phylodynamics and evolution.

• YouTube
• 39 minutes
• On-Demand
• Free Video

Leveraging High-throughput Functional Characterization Data to Dissect and Annotate Human Regulatory Regions

Explore high-throughput functional characterization techniques for dissecting and annotating human regulatory regions, leveraging advanced genomic mapping and integrative epigenomic approaches.

• YouTube
• 33 minutes
• On-Demand
• Free Video

Population Genetics in Large Genealogies

Explore population genetics using large genealogies, focusing on data analysis, relationship inference, and historical insights from Quebec's French Canadian population.

• YouTube
• 33 minutes
• On-Demand
• Free Video

Multiple Testing Methods for Low and High-Dimensional Testing Problems in Biomedical Research

Explore multiple testing methods for biomedical problems, covering low and high-dimensional scenarios. Learn optimization techniques, hypothesis testing, and power analysis through practical examples.

• YouTube
• 28 minutes
• On-Demand
• Free Video

Single Cell Data Integration Using Optimal Transport - 2023

Explore single-cell data integration using optimal transport. Learn unsupervised algorithms for multi-omic studies, alignment techniques, and performance quantification in computational genomics.

• YouTube
• 27 minutes
• On-Demand
• Free Video

mDBG and Alignment: The Tumultuous Fate of Sequence Bioinformatics Ideas

Explore sequence bioinformatics innovations, from minimizers to pan-genomics, and delve into the evolution of assembly and alignment techniques in genomic research.

• YouTube
• 35 minutes
• On-Demand
• Free Video

Detection of Hard and Soft Sweeps from Population Genomic Data

Explore detection methods for hard and soft selective sweeps in population genomics, focusing on Drosophila studies and statistical approaches.

• YouTube
• 28 minutes
• On-Demand
• Free Video

Selecting Between-sample ChIP-Seq Normalization Methods - Assumptions and Implications

Explore ChIP-seq normalization methods, their assumptions, and impact on differential binding analysis. Learn to select appropriate techniques for accurate genomic data interpretation.

• YouTube
• 44 minutes
• On-Demand
• Free Video

Modeling Spatial Omics and Cellular Niches with Graph Neural Networks

Explore graph neural networks for modeling spatial omics and cellular niches, focusing on tumor microenvironments and spatial protein profiles in tissue specimens.

• YouTube
• 41 minutes
• On-Demand
• Free Video

Biobanks from a Pathologist's Viewpoint - CGSI 2023

Explore biobanks from a pathologist's perspective, focusing on genetic disorders, variant classification, and the interplay between monogenic and polygenic factors in disease expression.

• YouTube
• 39 minutes
• On-Demand
• Free Video

Dissecting the Contribution of the Repeatome to Complex Traits

Explore the impact of repetitive DNA sequences on complex traits through genome-wide association studies, focusing on short tandem repeats and their role in human phenotypes and gene expression.

• YouTube
• 37 minutes
• On-Demand
• Free Video