Computational Genomics Summer Institute CGSI Courses

Bringing Genetics to the Point of Care

Explore how computational genomics can transform clinical practice by integrating genetic insights directly into patient care workflows and decision-making processes.

• YouTube
• 35 minutes
• Self-Paced
• Free Video

Decoding Gene Regulation in 3D and in Single Cells

Discover how machine learning decodes 3D chromatin structure and single-cell gene regulation through computational genomics approaches and predictive modeling techniques.

• YouTube
• 46 minutes
• Self-Paced
• Free Video

The Data Generating Process Matters - A Case Study with Single Cell Biology

Discover how data generating processes impact single cell biology analysis through practical case studies and computational genomics insights.

• YouTube
• 26 minutes
• Self-Paced
• Free Video

Conformal Prediction in Time Series

Discover advanced conformal prediction techniques for time series analysis, including JANET and JAPAN methods for adaptive prediction regions with uncertainty quantification.

• YouTube
• 29 minutes
• Self-Paced
• Free Video

Deep Learning for Statistical Inference in Imaging Genetics

Explore deep learning methods for statistical inference in imaging genetics, covering transferGWAS techniques and two-sample testing approaches for genomic image analysis.

• YouTube
• 35 minutes
• Self-Paced
• Free Video

Moment Kernels - A Simple and Scalable Approach for Equivariance to Rotations and Reflections in Deep Convolutional Networks

Discover moment kernels for achieving rotation and reflection equivariance in deep convolutional networks with a simple, scalable approach to geometric transformations.

• YouTube
• 36 minutes
• Self-Paced
• Free Video

AI-Enabled Imaging Genetics and Causal Inference in Genetic Biobanks

Explore AI-driven imaging genetics and causal inference methods for analyzing genetic biobanks and tissue phenotypes in histology cohorts.

• YouTube
• 35 minutes
• Self-Paced
• Free Video

Bayesian Aggregation of Multiple Annotations Enhances Rare Variant Association Testing

Discover how Bayesian methods aggregate multiple genomic annotations to improve rare variant association testing in computational genomics research.

• YouTube
• 25 minutes
• Self-Paced
• Free Video

How to Train Genetic Predictors of Epigenetic Features with a Sample Size of One

Discover how to develop genetic predictors for epigenetic features using innovative single-sample training methods in computational genomics research.

• YouTube
• 34 minutes
• Self-Paced
• Free Video

Metagenomics Analysis Systems - CGSI 2025

Explore advanced metagenomics analysis systems and computational tools for multi-step data exploration, urban microbiome mapping, and hybrid assembly pipelines.

• YouTube
• 41 minutes
• Self-Paced
• Free Video

Statistical Frontiers in GxE Meta-analysis for Coronary Artery Disease - Lessons from UK Biobank and All of Us

Explore advanced statistical methods for gene-environment interaction meta-analysis in coronary artery disease using UK Biobank and All of Us data insights.

• YouTube
• 29 minutes
• Self-Paced
• Free Video

Computational Methods for Identifying Associations of De Novo Non-Coding Variants and Epigenetic Variation with Autism Spectrum Disorder

Discover computational methods for identifying de novo non-coding variant associations with Autism Spectrum Disorder through genomic data integration and epigenetic analysis.

• YouTube
• 27 minutes
• Self-Paced
• Free Video

Computational Methods for Modeling and Analyzing Epigenomic Data

Explore advanced computational approaches for modeling epigenomic data, including cross-species methylation imputation, regulatory activity annotation, and genome-wide conservation scoring.

• YouTube
• 43 minutes
• Self-Paced
• Free Video

Novel Approaches to Study DNA Methylation as a Marker of Gene-Environment Interplay in Population-Based Biobanks

Discover novel DNA methylation approaches for studying gene-environment interactions in population biobanks, focusing on time-dependent prenatal and childhood exposure associations.

• YouTube
• 23 minutes
• Self-Paced
• Free Video

Population Structure in Human Genetic Data - A Basic Introduction and Some Challenges

Explore population structure fundamentals in human genetic data with John Novembre, covering basic concepts and current challenges in computational genomics research.

• YouTube
• 47 minutes
• Self-Paced
• Free Video