VCF File Manipulation

This beginner course teaches practical VCF file manipulation with bcftools, including indexing, inspecting chromosomes and samples, counting variants, splitting files, and variant calling for microbial bioinformatics.

Syllabus

How to read VCF files using bcftools tutorial | Bioinformatics for Beginners | Course.
How to read VCF files using bcftools | indexing VCFs.
Linux for Bioinformatics | How to count the number variants in a VCF file | Beginners Course.
How to read VCF files using bcftools | Extract and view chromosome names.
Rename chromosomes in a VCF file using bcftools.
Variant Calling using Snippy | Microbial Bioinformatics | Bioinformatics for Beginners | Course.
BCFTOOLS tutorial on how to count the number of snps and indels in a vcf file | Bioinformatics.
Extract sample ids from vcf files using bcftools | Bioinformatics Tutorial.
Variant Calling using BCFTOOLS | BCFTOOLS Tutorial | Bioinformatics for Beginners | Course.
Bioinformatics Tutorial: Count the number of variants per chromosome in a VCF file using bcftools.
Bioinformatics Tutorial | Split a VCF file into snps and indels using bcftools- full tutorial.
Split or Subset VCF files based on Sample IDs using bcftools.