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Molecular Dynamics Simulation

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Overview

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Learn the fundamentals of molecular dynamics simulation using Desmond software in this 30-minute tutorial. Explore the installation process of Desmond on Linux systems, master data preprocessing techniques for MD simulations, and visualize dynamic molecular interactions through animated simulations. Gain practical skills in implementing CUDA Toolkit on Linux to enhance computational performance for complex molecular modeling tasks.

Syllabus

Installation of Desmond on Linux: MD Simulation by Desmond Part 01.
Preprocessing The Data For Molecular Dynamics Simulation: MD Simulation by Desmond Part 2.
Molecular Dynamics Simulation Animation 05.
MD Simulation Animation 06.
How to Install CUDA Toolkit on Linux.
MD Simulation Animation 07.
MD Simulation Animation 08.

Taught by

Bioinformatics and Computational Biology

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