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Quantitative Systems Biology - Winter School on Developmental Energetics and Metabolism

International Centre for Theoretical Sciences via YouTube

Overview

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Explore the fundamental principles of quantitative systems biology through this comprehensive winter school program that examines the energetics and metabolism of biological systems. Delve into developmental energetics and metabolism fundamentals, discovering how metabolic networks self-organize and lead to cellular division processes. Learn advanced techniques for measuring spatiotemporal cell metabolism through imaging methods and understand cellular growth as a non-equilibrium chemical process. Investigate how metabolite concentrations relate to binding and regulatory sites while examining the energetics of cellular systems from a biophysical perspective. Study energy metabolism's role in development and analyze yield and dissipation patterns across different metabolic types. Examine redox centers and electron flow mechanisms alongside the thermodynamics of chemical reaction networks, progressing from basic principles to advanced applications. Explore resource partitioning in energy metabolism and utilize topological approaches to understand fundamental forces and nonequilibrium potentials. Investigate evolutionary aspects including drift, mutation, and evolution while analyzing metabolic organization challenges in growth and survival programs. Calculate the bioenergetics costs of building and maintaining cells and cellular components, and understand energy transduction through circuit theory applications to metabolism. Discover how cells operate as economic systems and what control strategies they employ for metabolic regulation. Study active matter theory and its applications to cytoskeletal dynamics, and examine metabolic plasticity's role in bacterial pathogenesis, providing a comprehensive foundation in quantitative approaches to biological systems.

Syllabus

Basics and Applications in Developmental Energetics/Metabolism by Jonathan Rodenfels
Ideas on Self-Organization of Metabolic Networks, How it can Lead to Division...by Sunil Laxman
Measurement of Spatiotemporal Cell Metabolism (imaging) by Xingbo Yang
Cellular Growth as a Non-equilibrium Chemical Process by Pablo Sartori
How do Metabolite Concentrations Compare to Binding & Regulatory Site... by Jonathan Rodenfels
Energetics of Cellular Systems by Pablo Sartori
Biophysics of Energy Metabolism in Development by Xingbo Yang
Yield and Dissipation Across and Within Metabolic Types by Pablo Sartori
Redox Centers and Electron Flow by Amitesh Anand
Thermodynamics of Chemical Reaction Networks: From Basic Principles....by Massimiliano Esposito
Resource Partitioning and Energy Metabolism by Amitesh Anand
Using Topology: Fundamental Forces and Nonequilibrium Potentials by Massimiliano Esposito
Drift, Mutation, and Evolution by Michael Lynch
Metabolic Organization - Challenges and Rules in Growth or Survival Programs by Sunil Laxman
The Bioenergetics Costs of Building and Maintaining Cells and Cell Parts by Michael Lynch
Energy Transduction, Circuit Theory, and Metabolism by Massimiliano Esposito
Thermodynamics of Chemical Reaction Networks: From Basic Principles to.........by Francesco Avanzini
Energetics of Biological Systems by Jonathan Rodenfels
Cell Metabolism as an Economy - what Control Strategies do Cells Use... by Sunil Laxman
Active Matter theory and cytoskeletal dynamics by Xingbo Yang
Energetics of Biological Systems by Jonathan Rodenfels
Metabolic Plasticity & Bacterial Pathogenesis by Stuti Srivastav

Taught by

International Centre for Theoretical Sciences

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