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AFNI Training Bootcamp - Comprehensive fMRI Analysis and Neuroimaging

MITCBMM via YouTube

Overview

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Master functional magnetic resonance imaging (fMRI) data analysis through this comprehensive bootcamp covering the AFNI (Analysis of Functional NeuroImages) software suite. Learn essential neuroimaging concepts starting with FMRI fundamentals and DICOM file handling, then progress through interactive AFNI sessions to build hands-on experience with the software interface. Develop skills in individual subject analysis techniques, statistical regression methods for neuroimaging data, and brain alignment procedures using standardized atlases. Follow complete fMRI analysis workflows from raw data preprocessing through statistical modeling and results interpretation. Explore group-level statistical analysis methods for comparing brain activation patterns across multiple subjects, including practical hands-on exercises with real datasets. Master region of interest (ROI) analysis using brain atlases and learn advanced connectivity analysis techniques including psychophysiological interactions (PPI). Gain expertise in surface-based analysis using SUMA (Surface Mapping) for cortical data visualization and analysis. Discover resting-state fMRI analysis methods and real-time correlation tools like InstaCorr for exploring brain connectivity patterns. Learn diffusion tensor imaging (DTI) analysis using FATCAT tools for studying white matter structure and connectivity. Develop advanced visualization skills for creating publication-quality brain images and interactive displays using both AFNI and SUMA software packages.

Syllabus

01 - AFNI, FMRI and Dimon 1 of 2
02 - AFNI, FMRI and Dimon 2 of 2
03 - AFNI Interactive: Session 1 of 2
04 - AFNI Interactive: Session 2 of 2
05 - Individual Subject Analysis: Part 1 of 2
06 - Individual Subject Analysis: Part 2 of 2
07 - Regression: Part 1 of 2
08 - Regression: Part 2 of 2
09 - Alignment and Atlases: Part 1 of 2
10 - Alignment and Atlases: Part 2 of 2
11 - FMRI Analysis: Start to End: Part 1 of 5
12 - FMRI Analysis Start to End: Part 2 of 5
13 - FMRI Analysis Start to End: Part 3 of 5
14 - FMRI Analysis Start to End: Part 4 of 5
15 - FMRI Analysis Start to End: Part 5 of 5
16 - Group Analysis in fMRI: Part 1 of 2
17 - Group Analysis in fMRI: Part 2 of 2
18 - Atlases and ROIs: Part 1 of 2
19 - Atlases and ROIs: Part 2 of 2
20 - Group Analysis: Part 1 of 2
21 - Group Analysis: Part 2 of 2
22 - Group Analysis: Hands-On: Part 1 of 2
23 - Group Analysis: Hands-On: Part 2 of 2
24 - Surface Analysis: SUMA: Part 1 of 5
25 - Surface Analysis: SUMA: Part 2 of 5
26 - Surface Analysis: SUMA: Part 3 of 5
27 - Surface Analysis: SUMA: Part 4 of 5
28 - Surface Analysis: SUMA: Part 5 of 5
29 - PsychoPhysiological Interactions (PPI)
30 - Resting State & InstaCorr: Part 1 of 2
31 - Resting State & InstaCorr: Part 2 of 2
32 - AFNI DTI & FATCAT - Part 1 of 2
33 - AFNI DTI & FATCAT - Part 2 of 2
34 - Advanced Visualization with AFNI & SUMA - Part 1 of 2
35 - Advanced Visualization with AFNI & SUMA - Part 2 of 2

Taught by

MITCBMM

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