How to Build a Docker With Your Code and Run It on APEER

Learn how to create and deploy a Docker module on APEER using your Python code for microscopy and image processing applications. Explore the step-by-step process of building a portable application, from setting up prerequisites to creating a workflow. Discover how to utilize APEER's cloud platform to easily connect your module with other existing applications shared by peers. Gain insights into input file handling, user interface design, geometric transformations, and function creation. Follow along as the tutorial guides you through local testing, JSON file configuration, and module debugging. By the end, you'll be equipped to push your code and create a customized end-to-end workflow on APEER, leveraging its free-to-use platform for personal or non-profit purposes.

Syllabus

Introduction
Prerequisites
Login
Create a new module
Build status
Copy code to local drive
Input files
Appearance
User Interface
Geometric Transformation
Create a new function
Define the function
Test code locally
Final sanity check
JSON file
Generate specification
Input description
Module debugger
Push the code
Create a workflow