Computational Genomics Summer Institute CGSI Courses

Large Language Models in Computational Biology - A Primer (2024 Update)

Explore how large language models are revolutionizing computational biology with this updated primer from Jian Ma at CGSI 2024.

• YouTube
• 44 minutes
• Self-Paced
• Free Video

Developing the Mathematical Foundations of Explainability and Using Them to Catch an LLM in a Lie

Explore mathematical foundations of AI explainability and techniques for detecting deception in large language models through computational genomics applications.

• YouTube
• 28 minutes
• Self-Paced
• Free Video

From Waveforms to Diagnosis - Scaling Sensor Intelligence for Healthcare

Explore how AI transforms wearable sensor data into medical diagnoses, covering foundation models, self-supervised learning, and breakthrough applications in Parkinson's detection.

• YouTube
• 32 minutes
• Self-Paced
• Free Video

Foundation Models in Health and Medicine

Discover how foundation models are revolutionizing healthcare through clinical evaluation frameworks and multimodal approaches for electronic health records and medical prediction tasks.

• YouTube
• 39 minutes
• Self-Paced
• Free Video

What Makes a Foundation Model in Health and Medicine?

Discover what defines effective foundation models in healthcare and medicine through clinical evaluation frameworks and multimodal data challenges.

• YouTube
• 30 minutes
• Self-Paced
• Free Video

Out of Distribution Generalization

Explore out-of-distribution generalization techniques, focusing on nuisance-induced spurious correlations and invariant risk minimization. Gain insights into robust neural networks and counterfactual invariance.

• YouTube
• 49 minutes
• Self-Paced
• Free Video

Interpretability and Out-of-Distribution Generalization in Deep Predictive Models

Explore interpretability and out-of-distribution generalization in deep predictive models, focusing on nuisance-induced spurious correlations and real-time Shapley value estimation techniques.

• YouTube
• 41 minutes
• Self-Paced
• Free Video

AI Models in Reproductive Medicine - CGSI 2024

Explore AI applications in reproductive medicine, focusing on predictive modeling for embryo selection and personalized fertility treatments. Learn about cutting-edge research and future directions.

• YouTube
• 32 minutes
• Self-Paced
• Free Video

Understanding the Role of Causality in AI for Healthcare

Explore causality's crucial role in AI for healthcare, focusing on improving patient care, addressing self-fulfilling prophecies, and enhancing treatment outcome predictions.

• YouTube
• 43 minutes
• Self-Paced
• Free Video

Large Language Models for Psychiatric Phenotype Extraction from Electronic Health Records

Discover how large language models extract psychiatric phenotypes from electronic health records in this genomics research presentation.

• YouTube
• 37 minutes
• Self-Paced
• Free Video

Digging into the Foundations of Generative AI for Healthcare

Explore foundations of generative AI in healthcare, focusing on automated learning for multivariate diffusions, denoising score matching, and targeted updates of language models.

• YouTube
• 25 minutes
• Self-Paced
• Free Video

Towards Foundation Models for Electronic Health Records

Explore foundation models for Electronic Health Records, examining their potential and limitations in healthcare decision support and data analysis.

• YouTube
• 28 minutes
• Self-Paced
• Free Video

Discourse-level Natural Language Understanding for Scientific Literature

Explore discourse-level natural language understanding for scientific literature, focusing on evidence extraction, method classification, fact verification, and relation extraction techniques.

• YouTube
• 45 minutes
• Self-Paced
• Free Video

Deep Generative Models in Medicine - CGSI 2023

Explore deep generative models in medicine, covering robustness, interpretability, missing data, language models, and diffusion techniques for improved medical applications and research.

• YouTube
• 32 minutes
• Self-Paced
• Free Video

Large Language Models for Computational Biology - A Primer

Explore large language models in computational biology, covering transformers, pretraining, and applications in genomics and single-cell analysis.

• YouTube
• 49 minutes
• Self-Paced
• Free Video