Computational Genomics Summer Institute CGSI Courses

Spatial Modeling of Single-Cell Data Using Deep Learning

Explore deep learning approaches for spatial modeling of single-cell data, focusing on Hi-C reads imputation and transcriptomic data prediction through graph-based methodologies.

• YouTube
• 30 minutes
• Self-Paced
• Free Video

Introduction to mRNA Design - CGSI 2024

Discover the fundamentals of mRNA design through computational approaches, exploring optimization algorithms, stability analysis, and practical applications in modern biotechnology and vaccine development.

• YouTube
• 34 minutes
• Self-Paced
• Free Video

Phylogenomic Tree Estimation Tutorial - CGSI 2024

Discover advanced techniques for phylogenomic tree estimation, including ASTRAL, DISCO, and QR-STAR methodologies for species tree inference and branch length estimation in computational genomics.

• YouTube
• 42 minutes
• Self-Paced
• Free Video

Constraints on Tumor Development

Explore genetic intra-tumor heterogeneity and evolutionary patterns across thousands of cancer genomes, examining key constraints in tumor development and progression.

• YouTube
• 40 minutes
• Self-Paced
• Free Video

Using Biobanks to Study People That Are Not in It - CGSI 2024

Discover innovative approaches to extend biobank research benefits beyond direct participants, exploring methodologies for broader population health insights and applications.

• YouTube
• 33 minutes
• Self-Paced
• Free Video

Psychiatric Phenotyping from EHR - Yes, We Can!

Discover how to leverage Electronic Health Records (EHR) for psychiatric phenotyping, exploring innovative computational methods and applications in mental health research.

• YouTube
• 30 minutes
• Self-Paced
• Free Video

Uni-alignment: A Parameter-free Framework for Fast and Accurate Sequence Alignment

Discover a parameter-free framework for fast sequence alignment through UniAligner, exploring innovative approaches to computational genomics and bioinformatics analysis.

• YouTube
• 47 minutes
• Self-Paced
• Free Video

Reconstructing Every Haplotype with De Novo Assembly

Discover advanced techniques for haplotype-resolved de novo genome assembly, focusing on phased assembly graphs and innovative methods for diploid and polyploid genome reconstruction.

• YouTube
• 29 minutes
• Self-Paced
• Free Video

Stochastic Dynamics of the Microbiome

Explore stochastic dynamics of microbiomes through advanced computational methods. Gain insights into microbial growth, spatial structure, and population trajectories using cutting-edge genomic analysis techniques.

• YouTube
• 46 minutes
• Self-Paced
• Free Video

Horizontal Gene Transfer Phylogenetics: A Random Walk Approach

Explore horizontal gene transfer phylogenetics using a random walk approach. Discover innovative methods for analyzing evolutionary relationships in the presence of lateral genetic transfer.

• YouTube
• 43 minutes
• Self-Paced
• Free Video

OnlineFDR Control with Applications to RNA-Seq Data

Explore onlineFDR control techniques for RNA-Seq data analysis, focusing on adaptive algorithms and their applications in multiple hypothesis testing scenarios.

• YouTube
• 47 minutes
• Self-Paced
• Free Video

The Case for Genetic Genealogies in Population Genomics

Explore genetic genealogies in population genomics, examining their role in understanding evolutionary history, selective sweeps, and ancestral recombination. Gain insights into cutting-edge research and methodologies.

• YouTube
• 45 minutes
• Self-Paced
• Free Video

Discourse-level Natural Language Understanding for Scientific Literature

Explore discourse-level natural language understanding for scientific literature, focusing on evidence extraction, method classification, fact verification, and relation extraction techniques.

• YouTube
• 45 minutes
• Self-Paced
• Free Video

Variational Inference for Large-Scale Genomic Data - CGSI 2022

Explore variational inference techniques for large-scale genomic data analysis, integrating molecular and phenome information to uncover disease mechanisms and enhance genetic association studies.

• YouTube
• 39 minutes
• Self-Paced
• Free Video

Phenotype Integration Improves Power and Specificity in Biobank-Based Genetic Studies of Major Depressive Disorder

Explore phenotype integration techniques to enhance power and specificity in biobank-based genetic studies of Major Depressive Disorder, improving accuracy in genome-wide association signals.

• YouTube
• 35 minutes
• Self-Paced
• Free Video