Computational Genomics Summer Institute CGSI Courses

Using Pooled CRISPR Screens to Study Biology

Explore the application of pooled CRISPR screens in biological research. Gain insights into cutting-edge techniques for studying gene function and cellular processes at a genome-wide scale.

• YouTube
• 30 minutes
• Self-Paced
• Free Video

Bridging the Gap: Deep Learning and Causality

Explore the intersection of deep learning and causality, focusing on bridging the gap between these fields. Gain insights into recent advancements and their applications in computational genomics.

• YouTube
• 26 minutes
• Self-Paced
• Free Video

Uni-alignment: A Parameter-free Framework for Fast and Accurate Sequence Alignment

Explore a parameter-free framework for fast and accurate sequence alignment, focusing on UniAligner's innovative approach to genomic data analysis and its implications for computational biology.

• YouTube
• 47 minutes
• Self-Paced
• Free Video

Inference of Selective Effects and Demographic Histories of Human Gut Commensals - CGSI 2024

Explore the evolutionary dynamics of human gut microbiomes through selective sweeps, rapid evolution, and strain turnover. Gain insights into bacterial adaptation within and across hosts.

• YouTube
• 28 minutes
• Self-Paced
• Free Video

The Real World Phenotypic Presentation of Mendelian Disease - CGSI 2024

Explore the complex real-world phenotypic manifestations of Mendelian diseases through Lisa Bastarache's insightful presentation at CGSI 2024, delving into recent research and clinical implications.

• YouTube
• 38 minutes
• Self-Paced
• Free Video

Reconstructing Every Haplotype with De Novo Assembly

Dive into advanced techniques for reconstructing haplotypes using de novo assembly, exploring cutting-edge methods in computational genomics and bioinformatics.

• YouTube
• 29 minutes
• Self-Paced
• Free Video

On the Problem of Inflation in TWAS and Other xWAS - CGSI 2024

Dive into the challenges of inflation in transcriptome-wide association studies and explore potential solutions in this insightful genomics lecture.

• YouTube
• 31 minutes
• Self-Paced
• Free Video

Categorization of 31 Computational Methods to Detect Spatially Variable Genes from Spatially Resolved Transcriptomics Data

Explore 31 computational methods for detecting spatially variable genes in transcriptomics data, categorized for effective analysis and application in genomics research.

• YouTube
• 50 minutes
• Self-Paced
• Free Video

Introduction to Integer Linear Programming - CGSI 2024

Dive into the fundamentals of Integer Linear Programming with Mohammed El-Kebir, exploring its applications in computational genomics and tumor phylogeny estimation.

• YouTube
• 29 minutes
• Self-Paced
• Free Video

Applications of Conformal Prediction in Medicine

Explore applications of conformal prediction in medicine, focusing on predictive inference for individual treatment effects and self-consistent conformal prediction techniques.

• YouTube
• 27 minutes
• Self-Paced
• Free Video

Variational Inference for Fun and Profit

Discover the fundamentals of variational inference in statistical analysis, exploring Bayesian techniques, SuSiE PCA methodology, and practical applications in computational genomics and regression modeling.

• YouTube
• 35 minutes
• Self-Paced
• Free Video

ML-Enabled Genetic Association Studies of High-Content Phenotypes

Explore cutting-edge machine learning applications in genetic association studies, focusing on high-content phenotypes and innovative frameworks like HistoGWAS for analyzing tissue phenotypes in histology cohorts.

• YouTube
• 24 minutes
• Self-Paced
• Free Video

Promises and Pitfalls of Scaling in Population Genetic Simulations

Explore the complexities of population genetic simulations, focusing on scaling methodologies, their potential benefits, and inherent limitations in computational genomics research.

• YouTube
• 38 minutes
• Self-Paced
• Free Video

Harnessing Computational Genomics for Predicting Viral Evolution

Discover cutting-edge computational methods for predicting viral evolution patterns, focusing on genomic analysis techniques and emerging variant detection through network-based approaches and mutational studies.

• YouTube
• 35 minutes
• Self-Paced
• Free Video

Epigenomics Data Analysis - A Tutorial

Master essential techniques for analyzing epigenomics data, including ChIP-Seq analysis, histone modification clustering, and transcriptome integration methods for genomic research.

• YouTube
• 35 minutes
• Self-Paced
• Free Video