Computational Genomics Summer Institute CGSI Courses

Acceleration of Bioinformatics Workloads Through Hardware-Algorithm Co-Design and Processing-in-Memory Technologies

Explore hardware-algorithm co-design and processing-in-memory technologies for accelerating bioinformatics workloads, focusing on genomic sequence analysis and mapping techniques.

• YouTube
• 31 minutes
• Self-Paced
• Free Video

Statistically Consistent Estimation of Level-1 Phylogenetic Networks from SNPs

Explore statistically consistent methods for estimating level-1 phylogenetic networks from SNP data, focusing on rooted and unrooted structures in computational genomics.

• YouTube
• 20 minutes
• Self-Paced
• Free Video

SPLASH: Statistical Signal Extraction for Unified Genomic Discovery

Explore SPLASH, a statistical algorithm for efficient genomic discovery. Learn about its applications in microbial sequencing, transcriptomics, and scientific research.

• YouTube
• 42 minutes
• Self-Paced
• Free Video

SARS-CoV-2 Saltations and Punctuational Evolution - CGSI 2024

Explore SARS-CoV-2 evolution through saltations and punctuated equilibrium, analyzing community structure of coordinated substitution networks for early variant detection.

• YouTube
• 31 minutes
• Self-Paced
• Free Video

Computational Methods for Modeling and Analyzing Epigenomic Data

Explore computational methods for modeling and analyzing epigenomic data, focusing on chromatin state annotation, gene-based modeling, and cross-species conservation in functional genomics.

• YouTube
• 23 minutes
• Self-Paced
• Free Video

Dissecting the Gene Regulatory Grammar at a Single Cell Resolution

Explore gene regulatory mechanisms at single-cell resolution. Discover cutting-edge techniques for analyzing multimodal data and constructing regulatory networks in genomics research.

• YouTube
• 30 minutes
• Self-Paced
• Free Video

Bref4 Compression: Increasing Analyses Performed on Compressed Sequence Data

Explore Bref4 compression techniques for efficient analysis of compressed sequence data. Learn to enhance genomic research capabilities and optimize data storage.

• YouTube
• 31 minutes
• Self-Paced
• Free Video

Hierarchical Models for Deep Mutational Scans - CGSI 2024

Explore hierarchical models for deep mutational scans, focusing on robust analysis frameworks, drug transporter biophysics, and variant effect prediction in genomics research.

• YouTube
• 35 minutes
• Self-Paced
• Free Video

Using the Pyro Probabilistic Programming Language for Statistical Genomics - CGSI 2024

Explore Pyro probabilistic programming for statistical genomics. Learn to model RNA splicing and implement isoform-specific knockdown using advanced computational techniques.

• YouTube
• 38 minutes
• Self-Paced
• Free Video

Fitting Time-Dependent Models Using Sicegar: Applications to RpoS-Dependent Gene Transcription in E. coli - CGSI 2024

Explore time-dependent modeling using sicegar for analyzing RpoS-dependent gene transcription timing in E. coli, with applications to multiple stress responses.

• YouTube
• 46 minutes
• Self-Paced
• Free Video

Genotype Representation Graph: Enabling Efficient Analysis of Biobank-Scale Data

Dive into efficient analysis of biobank-scale data using Genotype Representation Graphs. Explore innovative methods for estimating coalescence times and inferring whole-genome histories in large population datasets.

• YouTube
• 29 minutes
• Self-Paced
• Free Video

Modeling Alzheimer's Disease Risk in Real World Data

Explore innovative approaches to modeling Alzheimer's disease risk using real-world data, focusing on computational genomics techniques and their applications in understanding disease progression and risk factors.

• YouTube
• 24 minutes
• Self-Paced
• Free Video

Uncovering Cellular Dynamics and Metabolism with Geometric Deep Learning and Optimal Transport

Explore geometric deep learning and optimal transport techniques for uncovering cellular dynamics and metabolism in this insightful computational genomics presentation.

• YouTube
• 27 minutes
• Self-Paced
• Free Video

PBWT-based Algorithms for Large Cohort Genetics - CGSI 2024

Explore PBWT-based algorithms for large cohort genetics, covering efficient haplotype matching, IBD detection, and innovative approaches like d-PBWT and Syllable-PBWT for genomic data analysis.

• YouTube
• 26 minutes
• Self-Paced
• Free Video

Using Classical Algorithms for Modern Applications: MCMC for Tail Calculations, EM - Lecture

Explore classical algorithms applied to modern challenges: MCMC for tail probability estimation and EM for PET reconstruction. Gain insights into innovative adaptations of established methods for cutting-edge problems.

• YouTube
• 29 minutes
• Self-Paced
• Free Video