Bioinformagician Courses

WGS Variant Calling - Variant Calling with GATK - Part 1 - Detailed NGS Analysis Workflow

1 rating

Detailed tutorial on variant calling from WGS data using GATK best practices, covering quality control, alignment, duplicate marking, base recalibration, and variant discovery with HaplotypeCaller.

• YouTube
• 48 minutes
• Self-Paced
• Free Video

Understanding File Formats in Bioinformatics - VCF and gVCF

1 rating

Comprehensive guide to VCF and gVCF file formats in bioinformatics, covering structure, interpretation, and key concepts like genotypes, alleles, and variant recording for genomic analysis.

• YouTube
• 26 minutes
• Self-Paced
• Free Video

DESeq2 Basics Explained - Differential Gene Expression Analysis - Bioinformatics 101

1 rating

Comprehensive guide to DESeq2 for differential gene expression analysis in RNA-seq data, covering statistical models, normalization methods, and key steps in the analysis pipeline.

• YouTube
• 26 minutes
• Self-Paced
• Free Video

Metagenomics Taxonomic Classification Using Kraken 2 in OmicsBox

1 rating

Learn metagenomics analysis using Kraken 2 in OmicsBox. Covers data preprocessing, taxonomic classification, visualization, and differential abundance analysis for shotgun sequencing data.

• YouTube
• 42 minutes
• Self-Paced
• Free Video

Comprehensive Guide to Downstream Analysis for Single-Cell ATAC-Seq in R - scATAC-Seq Workflow

Comprehensive guide for downstream analysis of single-cell ATAC-Seq data using R and Signac. Covers integration with RNA-Seq, differential accessibility analysis, and visualization of genomic regions.

• YouTube
• 33 minutes
• Self-Paced
• Free Video

Somatic Variant Calling with Mutect2 - GATK Best Practices Tutorial

Explore somatic variant calling with Mutect2, covering key concepts, challenges, and hands-on demonstration of variant identification, filtering, and annotation using GATK best practices.

• YouTube
• 38 minutes
• Self-Paced
• Free Video

NGS Data 101 - FASTQ Files, Library Preparation, and Lane Multiplexing

Understand why NGS samples generate multiple FASTQ files through library prep, flowcells, lane multiplexing, and learn proper data organization strategies for bioinformatics workflows.

• YouTube
• 23 minutes
• Self-Paced
• Free Video

WGS Variant Calling - Variant Filtering and Annotation - Part 2 - Detailed NGS Analysis Workflow

Detailed tutorial on filtering and annotating genetic variants using GATK tools. Covers hard filtering, genotype refinement, and Funcotator for comprehensive variant analysis in bioinformatics workflows.

• YouTube
• 43 minutes
• Self-Paced
• Free Video

Weighted Gene Co-expression Network Analysis - Step-by-Step Tutorial - Part 1

Learn step-by-step Weighted Gene Co-expression Network Analysis (WGCNA) for RNA-Seq data, covering data manipulation, outlier detection, normalization, module identification, and visualization techniques.

• YouTube
• 36 minutes
• Self-Paced
• Free Video

Single-Cell Trajectory Analysis Using Monocle3 and Seurat - Step-by-Step Tutorial

Step-by-step tutorial on single-cell trajectory analysis using Monocle3 and Seurat. Covers theory, workflow, and practical implementation in R, including data processing, visualization, and gene expression analysis along trajectories.

• YouTube
• 49 minutes
• Self-Paced
• Free Video

Setup RNA-Seq Pipeline From Scratch - Fastq to Counts - Step-by-Step Tutorial

Step-by-step tutorial on processing RNA-Seq data: quality control, trimming, alignment, and quantification. Covers tools like FastQC, Trimmomatic, HISAT2, and featureCounts, with comparisons of aligners and best practices.

• YouTube
• 32 minutes
• Self-Paced
• Free Video

Bioinformatics and Computational Biology - The Present Gateway to Research

Comprehensive overview of bioinformatics and computational biology, covering research fields, career paths, applications, job prospects, and educational opportunities for aspiring professionals in this cutting-edge domain.

• YouTube
• 1 hour 2 minutes
• Self-Paced
• Free Video

Pseudo-Bulk Analysis for Single-Cell RNA-Seq Data - Detailed Workflow Tutorial

Comprehensive tutorial on pseudo-bulk analysis for single-cell RNA-Seq data, covering the what, why, and how. Includes data manipulation, aggregation, and differential expression analysis using R, Seurat, and DESeq2.

• YouTube
• 36 minutes
• Self-Paced
• Free Video

Find Markers and Cluster Identification in Single-Cell RNA-Seq Using Seurat - Workflow Tutorial

Comprehensive tutorial on identifying cell markers in single-cell RNA-Seq data using Seurat, covering various marker identification methods, data visualization, and cluster annotation techniques.

• YouTube
• 34 minutes
• Self-Paced
• Free Video

Integrate Single-Cell RNA-Seq Datasets in R Using Seurat - Detailed Seurat Workflow Tutorial

Comprehensive tutorial on integrating single-cell RNA-Seq datasets using Seurat in R, covering data merging, batch effect correction, and visualization techniques for improved analysis.

• YouTube
• 34 minutes
• Self-Paced
• Free Video